Functions

Lookup strings in text with Smith-Waterman

Smith-Waterman

Pairwise alignment using the Smith-Waterman algorithm

smith_waterman	Align 2 texts using Smith-Waterman
smith_waterman_recursive	Recursively align 2 texts using Smith-Waterman by aligning using Smith-Waterman

Multiple alignments

Multiple pairwise alignments using the Smith-Waterman algorithm

smithwaterman.Smith_Waterman

Perform multiple pairwise alignments using Smith Waterman for looking up a short text in a longer text.